CLI Usage

The WTV CLI provides an easy way to perform ion selection.

Basic Command

wtv-cli --msp_path input.msp --outpath output --mz_min 35 --mz_max 400 ...

Options

• --msp_path: Path to the input MSP file.
• --outpath: Directory to save the output files.
• --mz_min: Minimum m/z value (default: 35).
• --mz_max: Maximum m/z value (default: 400).
• --rt_window: Retention time window (default: 2.00).
• --min_ion_intensity_percent: Minimum ion intensity percentage (default: 7).
• --min_ion_num: Minimum number of ions (default: 2).
• --prefer_mz_threshold: Preferred m/z threshold (default: 60).
• --similarity_threshold: Similarity threshold (default: 0.85).
• --fr_factor: FR factor (default: 2.0).
• --retention_time_max: Maximum retention time (default: 68.80).

Example

wtv-cli --msp_path input.msp --outpath output --mz_min 50 --mz_max 500