WTV Documentation

Welcome to the WTV documentation. This project provides tools for ion selection in mass spectrometry data based on the WTV-2.0 algorithm.

Features

• Command-line interface (CLI) for easy usage
• Library functions for programmatic access
• Support for MSP file format
• Configurable parameters for different use cases

Quick Start

Installation

uv sync --all-extras

Running the CLI

uv run wtv-cli --msp_path input.msp --outpath ./output --mz_min 35 --mz_max 400

Navigation

Explore the sections below:

• Installation - How to install and set up the package
• CLI Usage - Using the command-line interface
• Library Usage - Using the library programmatically
• API Reference - Detailed API documentation
• Ion Selection API
• Utils API
• Similarity API

Acknowledgements

This project is based on the original work by Honglun Yuan et al., published in WTV_2.0.